species:   Artha
pid:       MI0005446
parent:    ath-MIR868
paralog:   
locus:     3:6488234-6488426
matures:   ['CUUCUUAAGUGCUGAUAAUGC', 'AUUGUCGGCACUUGAGAAUGU']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 3:6488234-6488426

0 out of bounds
9 alignments
9 proper strand
4 stranded perfect matches

                                                   ***********************                                         ***********************                                                       
GAAUAAGCAUUGUCGGCACUUGAGAAUGUAAAGUGAUGAUCAGCUAUCGUAUUUCAUGUCGUAAUAGUAGUCACGUUAGGGUGAUAUAACGAGGCGAGAGUUAUAUCAUCAUAGUGCGAUUUCUAUUAUGACAUAAAAUACGUUUUGGAUUUUAAAACACUUGACCUUCUUAAGUGCUGAUAAUGCUUCUUUC
(((.((((((((((((((((((((((.((.(((((..((((......(((((((.((((((((((((.((((.(((((.(((((((((((.........))))))))))).))))).)))).)))))))))))).))))))).....))))......))))).)).))))))))))))))))))))))..)))
---------------------------------------------------------------------------------------------------------------------------------------------------------------------CUUCUUAAGUGCUGAUAAUGC------- l=21 a=0 c
--------AUUGUCGGCACUUGAGAAUGU-------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c*
-----------------------------------------------------UCAUGUCGUAAUAGUAGUCAC----------------------------------------------------------------------------------------------------------------------- l=21 a=2 ma
---------------------------------------------------------------------------------------------------------------------GAUUUCUAUUAUGACAUAAAA------------------------------------------------------- l=21 a=0 ma*

-----------------------------------------------------UCAUGUCGUAAUAGUAGUCAC----------------------------------------------------------------------------------------------------------------------- l=21 a=2 (ma)
-----------------------------------------------------UCAUGUCGUAAUAGUAGUCACu---------------------------------------------------------------------------------------------------------------------- l=22 a=5 
-----------------------------------------------------UCAUGUCGUAAUAGUAGUCACG---------------------------------------------------------------------------------------------------------------------- l=22 a=1 
------------------------------------------------------CAUGUCGUAAUAGUAGUCACGU--------------------------------------------------------------------------------------------------------------------- l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111100
fn-111
